Fitness data for PP_2863 in Pseudomonas putida KT2440

conserved membrane protein of unknown function
SEED: Cold-shock DNA-binding domain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage PUT8 MOI 0.1 -1.2 -2.6 compare
phage P. putida PUT 7 MOI 1 -0.9 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.9 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.9 -2.7 compare
pH Growth at pH9 and (C) Trisodium citrate -0.9 -1.5 compare
carbon source D-Glucose (C); with MOPS -0.9 -1.6 compare
pH Growth at pH6 and (C) Trisodium citrate -0.8 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.8 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -2.5 compare
nitrogen source NAG (N) -0.8 -2.8 compare
carbon source Glucose (C) (40mM) -0.7 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.7 -2.6 compare
carbon source gluconate (C) -0.7 -3.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.7 -2.2 compare
pH Growth at pH7 and (C) D-Glucose -0.7 -1.1 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.8 +2.8 compare
phage PUT 8 MOI 1 +0.8 +2.0 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.9 +3.0 compare