Fitness data for PP_2834 in Pseudomonas putida KT2440

Putative D-galactarate dehydratase/Altronate dehydratase
SEED: Altronate dehydratase (EC 4.2.1.7)
KEGG: altronate hydrolase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
pH Growth at pH7 and (C) D-Glucose -1.0 -1.9 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6 -2.6 compare
nitrogen source 2,6-diaminopimelic (N) -0.6 -1.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -2.0 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.6 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.8 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.6 -1.8 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.5 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -1.8 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +1.0 compare
carbon source Hexanoic (C) +0.5 +3.1 compare
phage P. putida Sci small MOI 0.1 +0.5 +1.2 compare
carbon source 4-Aminobutyric 10 mM (C) +0.5 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.8 compare
carbon source Valerolactone (C) +0.6 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +3.1 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +1.9 compare