Fitness data for PP_2819 in Pseudomonas putida KT2440

Outer membrane protein OprJ
SEED: RND efflux system, outer membrane lipoprotein, NodT family
KEGG: multidrug resistance outer membrane protein OprJ

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -1.6 -1.8 compare
phage P. putida Sci Big MOI 0.1 -1.3 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.2 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2 -2.8 compare
carbon source D-Glucose (C) -1.1 -2.3 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.0 -1.5 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.9 -1.6 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.9 -3.2 compare
nitrogen source nitrogen source nitrite 1mM -0.9 -1.4 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.9 -1.8 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.8 -2.5 compare
pH Growth at pH6 and (C) Trisodium citrate -0.8 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -1.6 compare
carbon source acetate (C) -0.7 -1.3 compare
carbon source Tween 20 (C) -0.7 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -2.2 compare
nitrogen source Propiolactam (N) +0.7 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.5 compare
nitrogen source nitrogen source nitrite 0.5mM +0.8 +2.3 compare
pH Valerolactone (C) pH 6.5 +0.9 +2.1 compare