Fitness data for PP_2733 in Pseudomonas putida KT2440

conserved membrane protein of unknown function
SEED: FIG024285: Hypothetical protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -1.0 -1.7 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.9 -2.8 compare
carbon source 3-Hydroxydecanoic (C) -0.8 -2.6 compare
carbon source ferulate (C); with MOPS -0.8 -2.4 compare
phage P. putida PUT 7 MOI 1 -0.8 -1.7 compare
nitrogen source no extra (N); with MOPS -0.6 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -2.1 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.6 -2.0 compare
carbon source ferulate (C); with MOPS -0.5 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.5 -1.9 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.5 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +1.9 compare
carbon source Valerolactone (C) +0.6 +2.1 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.6 +1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.7 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +3.7 compare