Fitness data for PP_2678 in Pseudomonas putida KT2440

putative Hydrolase
SEED: SoxH protein, homolog

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.0 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -3.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -3.3 compare
nitrogen source 2,6-diaminopimelic (N) -0.8 -2.0 compare
stress R2A with Fusaric 120 ug/mL -0.8 -2.8 compare
pH Growth at pH8 and (C) D-Glucose -0.8 -1.9 compare
pH Valerolactone (C) pH 6.5 -0.8 -2.2 compare
no stress control Growth with no stress -0.7 -2.3 compare
nitrogen source nitrite (N) -0.7 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.7 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -1.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 +1.3 compare
carbon source 1,3-Hexanediol (C) +0.7 +3.6 compare
carbon source DL-2-Aminoadipic 10 mM (C) +0.8 +3.0 compare
phage P. putida Missley MOI 0.1 +0.8 +1.4 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.8 +2.5 compare
carbon source 3-methyl-3-buten-1-ol 0.1 vol% (C) +0.8 +4.8 compare
carbon source Nonanoic (C) +0.9 +3.3 compare
nitrogen source D-2-Aminobutyric (N) +0.9 +3.3 compare