Fitness data for PP_2568 in Pseudomonas putida KT2440

Ring-cleaving dioxygenase
SEED: Ring-cleaving dioxygenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.0)


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group condition fitness t score  
carbon source Tween 20 (C) -5.2 -1.1 compare
phage P. putida Sci small MOI 0.1 -4.9 -0.9 compare
phage P. putida Sci small MOI 0.1 -4.4 -0.9 compare
nitrogen source Propandiamine (N) -3.3 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.3 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -3.2 -1.3 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -2.8 -1.5 compare
pH Valerolactone (C) pH 6.5 -2.8 -1.2 compare
micoeukaryotes C.elegans, mixed culture-2 -2.4 -1.5 compare
r2a control R2A control -2.4 -1.7 compare
nitrogen source NAG (N); with MOPS -2.4 -1.0 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.3 -1.5 compare
pH D-Glucose (C) pH 6 -2.3 -1.1 compare
temperature shift Temperature shift 10_to_21 -2.1 -1.8 compare
carbon source D-Lysine 10 mM (C) -2.1 -1.8 compare
stress R2A with Fusaric 480 ug/mL -2.0 -1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -2.0 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.0 -1.7 compare
carbon source D-Glucose (C) 2.5 mM +2.0 +3.1 compare
nitrogen source D-2-Aminobutyric (N) +2.1 +1.5 compare