Fitness data for PP_2564 in Pseudomonas putida KT2440

putative Quercetin 2,3-dioxygenase
SEED: Pirin-related protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.8 -3.4 compare
carbon source 1,3-Hexanediol (C) -0.8 -4.0 compare
nitrogen source nitrogen source nitrate 5mM -0.7 -2.5 compare
phage P. putida Sci Big MOI 0.1 -0.6 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.5 compare
pH Growth at pH8 and (C) D-Glucose -0.6 -1.8 compare
carbon source ferulate (C); with MOPS -0.6 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -1.7 compare
nitrogen source no extra (N); with MOPS -0.5 -2.1 compare
nitrogen source NAG (N); with MOPS -0.5 -1.0 compare
microaerobic m9 microaerobic M9 -0.5 -1.9 compare
carbon source DL-3-Hydroxyisobutyric (C) -0.5 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.5 -2.0 compare
stress Growth with Chloride 500 mM -0.5 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5 +2.1 compare
dilutelb LB 0.1x with 55.5 mM D-Glucose +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.0 compare