Fitness data for PP_2496 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Mycobacteriophage Barnyard protein gp56

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source carbon source 2-Deoxy-D-glucose 100 mM -1.7 -3.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.4 -3.1 compare
carbon source carbon source D-Glucose 55.5 mM -1.4 -2.1 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -1.2 -3.2 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM -1.1 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.0 -2.4 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -1.0 -1.4 compare
pH pH 9 -0.9 -2.1 compare
phage P. putida Sci small MOI 0.1 -0.9 -1.2 compare
pH pH 7 -0.9 -1.7 compare
carbon source ferulate (C); with MOPS -0.9 -1.1 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.8 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.0 compare
carbon source carbon source Glycerol 108.6 mM -0.8 -2.6 compare
pH pH 6 -0.8 -2.4 compare
nitrogen source D-2-Aminobutyric (N) -0.8 -2.5 compare
carbon source carbon source Bisabolol 45 mM -0.7 -2.4 compare
phage P. putida South MOI 10 +0.8 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.0 +1.5 compare