Fitness data for PP_2454 in Pseudomonas putida KT2440

ribose ABC transporter, periplasmic ribose-binding subunit
SEED: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
KEGG: ribose transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 -2.6 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -1.0 -2.1 compare
pH pH 7 -1.0 -3.1 compare
phage P. putida Missley MOI 0.1 -0.9 -1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -2.3 compare
carbon source Ferulic Acid (C) -0.7 -3.1 compare
carbon source Octanoic (C) -0.7 -2.6 compare
carbon source D-Glucose (C); with MOPS -0.7 -1.8 compare
nitrogen source nitrogen source nitrite 1mM -0.7 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -2.8 compare
supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x -0.7 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -2.2 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.6 -1.9 compare
carbon source 1-Pentanol (C) +0.6 +2.2 compare
carbon source 5-Aminovaleric 10 mM (C) +0.7 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.3 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.9 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.6 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.0 +2.4 compare