Fitness data for PP_2393 in Pseudomonas putida KT2440

DNA polymerase II
SEED: DNA polymerase II (EC 2.7.7.7)
KEGG: DNA polymerase II

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.3 compare
pH pH 8 -0.5 -2.8 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.5 -2.5 compare
phage P. putida Sci small MOI 0.1 -0.4 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -2.3 compare
pH Growth at pH6 and (C) Trisodium citrate -0.3 -1.9 compare
nitrogen source 2,6-diaminopimelic (N) -0.3 -1.8 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -2.3 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.3 -2.0 compare
carbon source 1,3-Hexanediol (C) -0.3 -2.2 compare
nitrogen source Propiolactam (N) -0.3 -2.0 compare
nitrogen source NAG (N); with MOPS -0.3 -1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 +1.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.3 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 +1.8 compare
nitrogen source NAG (N); with MOPS +0.3 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +2.2 compare