Fitness data for PP_2311 in Pseudomonas putida KT2440

Mg-dependent cytoplasmic DNase / RNase
SEED: Deoxyribonuclease TatD
KEGG: TatD DNase family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
nitrogen source nitrogen source nitrite 0.5mM -2.5 -3.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2 -2.9 compare
lb outgrowth control more dilute start LB outgrowth control more dilute start -1.0 -2.9 compare
phage P. put South MOI 10 -0.9 -1.2 compare
phage P. putida Sci Big MOI 0.1 -0.9 -0.9 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.9 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.8 -1.2 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.8 -2.2 compare
stress R2A with Fusaric 480 ug/mL -0.8 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.2 compare
stress Growth with Chloride 500 mM +0.8 +2.1 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.8 +2.7 compare
pH Growth at pH9 and (C) Trisodium citrate +0.9 +2.0 compare
temperature shift Temperature shift 30_to_34; with MOPS +0.9 +2.8 compare
pH Growth at pH6 and (C) Trisodium citrate +1.0 +2.2 compare
carbon source D-Glucose (C) +1.0 +2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.0 +1.9 compare