Fitness data for PP_2282 in Pseudomonas putida KT2440

Minor capsid protein 10
SEED: Phage capsid and scaffold

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -0.5 -2.3 compare
pH Growth at pH8 and (C) D-Glucose -0.4 -1.8 compare
carbon source Trisodium citrate 10 mM (C) -0.4 -2.7 compare
carbon source D-Lysine 10 mM (C) -0.4 -2.2 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.4 -2.0 compare
phage PUT 8 MOI 1 -0.4 -1.6 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.3 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 +2.1 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +2.2 compare
nitrogen source 2,6-diaminopimelic (N) +0.4 +2.0 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.4 +1.8 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.4 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +1.8 compare
phage P. putida Sci Big MOI 0.1 +0.4 +1.9 compare
temperature shift Temperature shift 30_to_25 +0.4 +2.5 compare
pH pH 8 +0.4 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 +2.1 compare
carbon source carbon source Bisabolene 48.9 mM +0.4 +2.1 compare
carbon source carbon source 3-O-methyl-glucose 10 mM +0.4 +2.2 compare
pH pH 9 +0.5 +2.7 compare