Fitness data for PP_2263 in Pseudomonas putida KT2440

Sugar ABC transporter, permease protein
SEED: Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)
KEGG: multiple sugar transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
nitrogen source D-2-Aminobutyric (N) -0.5 -2.2 compare
phage P. putida Sci Big MOI 0.1 -0.5 -1.7 compare
carbon source D-Glucose (C); with MOPS -0.4 -1.7 compare
carbon source Trisodium citrate (C) -0.4 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.9 compare
carbon source Crotonic (C) -0.4 -2.1 compare
temperature Growth at 25C; with MOPS -0.4 -1.6 compare
nitrogen source D-2-Aminobutyric (N) -0.3 -1.3 compare
carbon source 2-Methylbutanoic (C) +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.0 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.4 +1.4 compare
phage PUT8 MOI 10 +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.8 compare
toxin pUC18_phdP1_pSU18T_docP1 +0.4 +2.5 compare
pH pH 9 +0.4 +1.9 compare
carbon source L-Leucine (C) +0.4 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +2.1 compare
carbon source ferulate (C); with MOPS +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.8 compare