Fitness data for PP_2262 in Pseudomonas putida KT2440

sugar ABC transporter, permease protein
SEED: Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)
KEGG: multiple sugar transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Crotonic (C) -0.5 -2.6 compare
carbon source ferulate (C); with MOPS -0.5 -1.8 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.5 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -2.0 compare
carbon source 1,3-Hexanediol (C) -0.4 -2.0 compare
carbon source 5-Aminovaleric 10 mM (C) -0.4 -2.2 compare
temperature shift Temperature shift 30_to_25 -0.4 -1.5 compare
phage P. putida South MOI 10 -0.4 -1.4 compare
carbon source 3-Hydroxydecanoic (C) -0.4 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.6 compare
pH Growth at pH6 and (C) Trisodium citrate +0.4 +1.7 compare
phage P. putida Sci small MOI 0.1 +0.4 +1.3 compare
phage P. put South MOI 0.1 +0.4 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +1.8 compare
pH Growth at pH6 and (C) D-Glucose +0.6 +2.1 compare
phage P. putida Missley MOI 0.1 +0.6 +2.6 compare