Fitness data for PP_2259 in Pseudomonas putida KT2440

putative sigma-54 dependent transcriptional regulator
SEED: sigma-54 dependent transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -0.7 -2.3 compare
carbon source 3-Hydroxydecanoic (C) -0.6 -3.4 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.4 compare
carbon source ferulate (C); with MOPS -0.5 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.5 compare
carbon source D-Glucose (C); with MOPS -0.5 -1.7 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.4 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.8 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.3 compare
phage P. put South MOI 10 -0.4 -1.3 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -1.2 compare
carbon source Acetate Carbon Source (20mM) -0.3 -2.2 compare
supernatant Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x +0.3 +2.0 compare
carbon source Lignin Monomers (C) +0.4 +1.9 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.4 +1.7 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.6 compare
carbon source Tween 20 (C) +0.4 +1.8 compare
phage P. putida Missley MOI 0.1 +0.5 +2.3 compare