Fitness data for PP_2250 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: LysR family transcriptional regulator PA2758

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source Adenine (N) -2.4 -10.0 compare
nitrogen source Adenine (N) -2.3 -9.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -2.6 compare
carbon source ferulate (C); with MOPS -0.6 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.6 -1.6 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.6 -1.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.5 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.9 compare
phage P. putida PUT 7 MOI 1 +0.5 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5 +1.9 compare
phage P. putida Sci small MOI 0.1 +0.5 +1.6 compare
pH Growth at pH8 and (C) D-Glucose +0.5 +1.8 compare
carbon source Vanillic Acid (C) +0.5 +3.4 compare
phage P. putida PUT10 MOI 10 +0.6 +2.6 compare
nitrogen source 2,6-diaminopimelic (N) +0.6 +1.8 compare
phage P. putida South MOI 1 +0.8 +4.1 compare
phage P. putida Missley MOI 0.1 +1.0 +3.6 compare