Fitness data for PP_2232 in Pseudomonas putida KT2440

XRE family transcriptional regulator
SEED: Transcriptional regulator, Cro/CI family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
temperature shift Temperature shift 30_to_21; with MOPS -1.6 -2.1 compare
temperature shift Temperature shift 30_to_25; with MOPS -1.6 -1.8 compare
carbon source Myristic (C) -1.4 -1.9 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -1.2 -3.2 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM -1.0 -2.7 compare
carbon source L-Phenylalanine 5 mM (C) -1.0 -2.9 compare
carbon source ferulate (C); with MOPS -1.0 -2.6 compare
temperature shift Temperature shift 10_to_25 -1.0 -3.7 compare
phage PUT 8 MOI 1 -0.9 -1.4 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.8 -1.5 compare
nitrogen source NAG (N); with MOPS -0.8 -1.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.8 +2.6 compare
pH Growth at pH6 and (C) Trisodium citrate +0.8 +2.2 compare
phage P. putida PUT10 MOI 0.1 +0.8 +4.1 compare
phage P. putida Sci small MOI 0.1 +0.8 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +1.1 +2.0 compare
micoeukaryotes C.elegans, mixed culture-2 +1.3 +3.5 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 +1.5 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.8 +1.5 compare