Fitness data for PP_2195 in Pseudomonas putida KT2440

Putrescine-binding periplasmic protein
SEED: Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
pH pH 5 -0.5 -2.3 compare
pH pH 6 -0.5 -2.1 compare
phage P. putida South MOI 10 -0.5 -1.7 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.4 -2.3 compare
stress R2A with Fusaric 480 ug/mL -0.4 -2.0 compare
temperature shift Temperature shift 30_to_25 -0.4 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.0 compare
temperature Growth at 25C -0.4 -1.6 compare
phage PUT8 MOI 0.1 -0.3 -1.6 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.3 compare
carbon source ferulate (C); with MOPS -0.3 -1.2 compare
pH Growth at pH6 and (C) D-Glucose -0.3 -1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -2.2 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.3 -2.1 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +2.0 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Cys +0.4 +2.3 compare
carbon source Valeric (C) +0.4 +2.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.3 compare