Fitness data for PP_2192 in Pseudomonas putida KT2440

putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein
SEED: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


Add gene:

Or see all 989 experiments or choose conditions

group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -2.0 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 -2.0 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -1.1 -3.3 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.0 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 -2.2 compare
carbon source Valerolactone (C) -0.9 -2.6 compare
carbon source ferulate (C); with MOPS -0.9 -2.1 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.9 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -1.6 compare
phage P. putida South MOI 10 -0.7 -1.4 compare
temperature shift Temperature shift 30_to_34; with MOPS +0.7 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +3.3 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.7 compare
nitrogen source nitrogen source Ammonium chloride 20mM +0.8 +3.2 compare
pH Growth at pH6 and (C) Trisodium citrate +0.9 +3.7 compare
pH Growth at pH7 and (C) D-Glucose +0.9 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +2.2 compare
nitrogen source D-2-Aminobutyric (N) +1.2 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 +1.5 compare