Fitness data for PP_2188 in Pseudomonas putida KT2440

putative tRNA-(Ms(2)io(6)a)-hydroxylase
SEED: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
KEGG: tRNA-(ms[2]io[6]A)-hydroxylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source Propandiamine (N) -0.8 -2.5 compare
phage PUT8 MOI 10 -0.8 -3.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.7 -1.7 compare
stress Growth with Chloride 500 mM -0.7 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.1 compare
nitrogen source DL-2-Aminobutyric (N) -0.6 -3.2 compare
carbon source carbon source D-Glucose 55.5 mM -0.6 -1.4 compare
phage P. putida PUT 7 MOI 1 -0.6 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5 -1.9 compare
carbon source butyrate (C) -0.5 -2.0 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.5 +1.7 compare
pH Growth at pH6 and (C) Trisodium citrate +0.5 +2.3 compare
nitrogen source nitrate (N) +0.5 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.8 compare
phage P. putida Sci Big MOI 0.1 +0.5 +1.8 compare
pH Growth at pH6 and (C) Trisodium citrate +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.6 +2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.7 compare