Fitness data for PP_2176 in Pseudomonas putida KT2440

transcriptional regulator, LysR family
SEED: D-serine dehydratase transcriptional activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -0.7 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 -3.2 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Cys -0.7 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.0 compare
nitrogen source 2,6-diaminopimelic (N) -0.6 -1.8 compare
phage P. putida South MOI 10 -0.5 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.2 compare
nitrogen source nitrogen source nitrite 1mM -0.5 -1.3 compare
carbon source D-Glucose (C); with MOPS -0.5 -1.4 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM -0.5 -1.3 compare
carbon source Levulinic Acid (C) -0.5 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +2.2 compare
time series Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement +0.5 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.5 +1.4 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +1.2 compare
phage P. putida Sci small MOI 0.1 +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.6 +2.0 compare