Fitness data for PP_2126 in Pseudomonas putida KT2440

DNA-binding response regulator, LuxR family
SEED: DNA-binding response regulator, LuxR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -1.6 -2.0 compare
phage P. putida Sci small MOI 0.1 -1.3 -2.0 compare
carbon source ferulate (C); with MOPS -1.0 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -2.1 compare
nitrogen source Ammonium chloride (N) -0.9 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -2.1 compare
carbon source ferulate (C); with MOPS -0.7 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -1.8 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.7 -2.1 compare
carbon source Valeric (C) -0.7 -1.7 compare
temperature Growth at 25C -0.6 -1.8 compare
nitrogen source nitrite (N) -0.6 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -2.2 compare
nitrogen source Ammonium chloride (N); with MOPS -0.6 -1.6 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM -0.6 -2.4 compare
pH Growth at pH9 and (C) D-Glucose -0.6 -2.6 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.9 compare
carbon source Valerolactone (C) +0.6 +2.2 compare