Fitness data for PP_2060 in Pseudomonas putida KT2440

DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent
SEED: Redox-sensitive transcriptional activator SoxR
KEGG: MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
nitrogen source Urea (N) -5.0 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -4.0 -1.7 compare
phage P. put South MOI 10 -3.9 -1.6 compare
carbon source ferulate (C); with MOPS -3.2 -1.6 compare
carbon source carbon source Bisabolol 45 mM -2.0 -1.5 compare
no stress control Growth with no stress -1.9 -2.1 compare
pH pH 6 -1.9 -1.5 compare
temperature shift Temperature shift 30_to_21; with MOPS -1.9 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8 -1.3 compare
pH Growth at pH9 and (C) D-Glucose -1.8 -3.0 compare
pH Growth at pH6 and (C) Trisodium citrate -1.7 -1.6 compare
stress 2-Ethylhexanol 0.4 vol% -1.7 -2.3 compare
carbon source carbon source 4-vinylphenol 0.01 mM -1.6 -1.3 compare
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -1.6 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.6 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.6 -1.2 compare
stress Butyrolactam 2 vol% -1.5 -2.5 compare
pH pH 8 -1.4 -1.5 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -1.3 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.5 +2.1 compare