Fitness data for PP_2009 in Pseudomonas putida KT2440

putative 1-aminocyclopropane-1-carboxylate deaminase
SEED: 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)
KEGG: 1-aminocyclopropane-1-carboxylate deaminase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -1.6 -2.9 compare
phage P. putida PUT 7 MOI 1 -1.3 -3.5 compare
phage P. putida Sci small MOI 0.1 -0.9 -1.9 compare
carbon source Valerolactone (C) -0.6 -2.5 compare
carbon source D-Glucose (C) -0.6 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.7 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.5 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.8 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -1.3 compare
temperature Growth at 30C; with MOPS -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.0 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5 +1.9 compare
carbon source Nonanoic (C) +0.5 +2.3 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) +0.5 +2.5 compare
carbon source 1,3-Butandiol (C) +0.6 +2.1 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.6 +2.1 compare
carbon source L-Leucine (C) +0.7 +2.5 compare
pH Valerolactone (C) pH 6.5 +0.7 +2.2 compare
pH pH 6 +0.8 +2.2 compare