Fitness data for PP_2004 in Pseudomonas putida KT2440

Transcriptional regulator, AraC family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.8 -2.8 compare
phage P. putida Sci small MOI 0.1 -0.7 -2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.4 compare
nitrogen source 2,6-diaminopimelic (N) -0.5 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -2.6 compare
carbon source ferulate (C); with MOPS -0.4 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.1 compare
carbon source Succinic Acid (C) -0.4 -2.8 compare
carbon source Valerolactone (C) -0.4 -2.1 compare
phage P. putida Sci small MOI 0.1 -0.4 -1.3 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.4 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.6 compare
carbon source Octanoic (C) -0.4 -2.6 compare
nitrogen source NAG (N); with MOPS -0.4 -1.4 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Cys -0.4 -1.9 compare
nitrogen source nitrate (N) -0.4 -1.7 compare
carbon source Valeric (C) +0.4 +2.4 compare
pH pH 9 +0.4 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.7 compare
temperature shift Temperature shift 10_to_30 +0.5 +2.7 compare