Fitness data for PP_1981 in Pseudomonas putida KT2440

tRNA-dihydrouridine synthase C
SEED: tRNA-dihydrouridine synthase C (EC 1.-.-.-)
KEGG: tRNA-dihydrouridine synthase C

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source carbon source 4-vinylphenol 0.01 mM -1.5 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.1 -1.5 compare
carbon source L-Phenylalanine 5 mM (C) -0.9 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.0 compare
pH Growth at pH7 and (C) Trisodium citrate -0.8 -1.4 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.7 -1.7 compare
nitrogen source nitrate (N) -0.7 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -2.0 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.7 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.5 compare
temperature Growth at 30C; with MOPS +0.7 +2.1 compare
phage P. putida PUT10 MOI 0.1 +0.7 +3.0 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Gly +0.7 +3.4 compare
carbon source Trisodium citrate (C) +0.7 +1.9 compare
nitrogen source 2,6-diaminopimelic (N) +0.8 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9 +1.5 compare
phage PUT 8 MOI 1 +0.9 +2.1 compare
stress Growth with Chloride 500 mM; with MOPS +0.9 +3.6 compare
temperature Growth at 25C +1.0 +2.5 compare