Fitness data for PP_1967 in Pseudomonas putida KT2440

tRNA D-aminoacylase
SEED: Putative deoxyribonuclease YcfH
KEGG: TatD DNase family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
nitrogen source Propandiamine (N) -1.0 -3.8 compare
carbon source Trisodium citrate (C) -0.7 -1.6 compare
phage P. putida Missley MOI 0.1 -0.7 -1.5 compare
carbon source DL-3-Hydroxybutyric (C) -0.6 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.2 compare
nitrogen source D-2-Aminobutyric (N) -0.6 -1.6 compare
carbon source Valerolactone (C) -0.6 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.2 compare
stress R2A with Fusaric 480 ug/mL -0.6 -1.6 compare
stress Formaldehyde 0.03125 vol% -0.6 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.6 +2.0 compare
carbon source pyruvate (C) +0.6 +2.8 compare
nitrogen source 2,6-diaminopimelic (N) +0.6 +1.6 compare
temperature shift Temperature shift 30_to_10; with MOPS +0.6 +3.5 compare
carbon source Hexanoic (C) +0.7 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +2.2 compare
nitrogen source Imidazole (N) +0.7 +3.5 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.7 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +3.6 compare