Fitness data for PP_1889 in Pseudomonas putida KT2440

Type 1 pili subunit FimD
SEED: Outer membrane usher protein FIMD
KEGG: outer membrane usher protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -0.3 -1.6 compare
carbon source Valerolactam 10 mM (C) -0.3 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -2.0 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -1.6 compare
carbon source D-Glucose (C) -0.2 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -1.9 compare
phage P. putida Sci Big MOI 0.1 -0.2 -1.2 compare
nitrogen source Ammonium chloride and TNT (N) +0.2 +1.9 compare
carbon source ferulate (C); with MOPS +0.2 +1.3 compare
stress R2A with Fusaric 120 ug/mL +0.2 +1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +1.3 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.2 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.3 compare
pH pH 9 +0.3 +1.5 compare
carbon source 3-Hydroxydecanoic (C) +0.3 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.5 compare
pH Growth at pH6 and (C) Trisodium citrate +0.3 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.9 compare