Fitness data for PP_1880 in Pseudomonas putida KT2440

Outer membrane autotransporter
SEED: Outer membrane autotransporter barrel

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -0.5 -2.3 compare
phage P. putida Missley MOI 0.1 -0.5 -1.9 compare
carbon source Delta-Nonalactone (C) -0.4 -2.7 compare
carbon source Nonanoic (C) -0.4 -2.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.6 compare
phage P. putida Sci small MOI 0.1 -0.4 -1.5 compare
phage P. putida Sci Big MOI 0.1 -0.4 -2.1 compare
pH pH 6 -0.4 -1.9 compare
phage PUT8 MOI 0.1 -0.4 -2.3 compare
carbon source carbon source Bisabolene 48.9 mM -0.4 -2.1 compare
pH Valerolactone (C) pH 6.5 -0.4 -2.5 compare
carbon source Valeric (C) -0.4 -2.1 compare
temperature shift Temperature shift 30_to_25 -0.4 -1.9 compare
stress Growth with Chloride 500 mM; with MOPS +0.3 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.7 compare
stress Growth with Chloride 200 mM +0.4 +2.4 compare
pH Growth at pH6 and (C) Trisodium citrate +0.5 +2.5 compare