Fitness data for PP_1611 in Pseudomonas putida KT2440

2-dehydro-3-deoxyphosphooctonate aldolase
SEED: 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)
KEGG: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source D-Mannose (C) -0.9 -1.7 compare
reactor_pregrowth Adaptation in M9 media timecourse 4; day 3 -0.7 -3.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.7 -3.0 compare
pH pH 5 -0.6 -2.2 compare
carbon source L-Leucine (C) -0.6 -2.4 compare
carbon source D-Fructose (C) -0.6 -2.0 compare
carbon source L-Alanine (C) -0.6 -3.3 compare
carbon source Myristic (C) -0.6 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -2.4 compare
nitrogen source L-Leucine (N) -0.6 -3.5 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.6 -2.1 compare
temperature shift Temperature shift 30_to_10; with MOPS -0.6 -2.4 compare
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -0.6 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -2.4 compare
nitrogen source DL-2-Aminobutyric (N) -0.6 -3.3 compare
carbon source L-Leucine (C) -0.6 -2.5 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.7 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +1.5 compare
phage P. putida Sci Big MOI 0.1 +0.8 +3.1 compare
micoeukaryotes C.elegans, mixed culture-2 +0.8 +5.1 compare