Fitness data for PP_1528 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE
KEGG: cysteine desulfuration protein SufE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.2)


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group condition fitness t score  
nitrogen source nitrogen source nitrite 1mM -4.6 -1.6 compare
nitrogen source Urea (N) -4.3 -1.5 compare
temperature shift Temperature shift 30_to_21; with MOPS -4.2 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -4.0 -1.6 compare
no stress control Growth with no stress -3.3 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -3.2 -2.1 compare
carbon source Tween 20 (C) -3.0 -0.9 compare
carbon source ferulate (C); with MOPS -2.9 -1.2 compare
temperature shift Temperature shift 10_to_25; with MOPS -2.9 -1.9 compare
pH Growth at pH9 and (C) Trisodium citrate -2.8 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.8 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.8 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.8 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.7 -1.2 compare
carbon source ferulate (C); with MOPS -2.5 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.5 -1.6 compare
pH Growth at pH8 and (C) Trisodium citrate -2.4 -1.3 compare
stress Cholinium aspartate 10 vol% -2.4 -2.8 compare
carbon source butyrate (C) -2.3 -0.9 compare
temperature shift Temperature shift 10_to_30 -2.2 -2.1 compare