Fitness data for PP_1527 in Pseudomonas putida KT2440

tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.1 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -2.0 compare
phage P. putida Sci small MOI 0.1 -0.8 -1.5 compare
stress Cholinium glutamate 10 vol% -0.8 -4.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -3.5 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.7 +2.8 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.8 +2.2 compare
carbon source carbon source 3-O-methyl-glucose 10 mM +0.8 +2.5 compare
pH pH 5 +0.8 +2.3 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.8 +2.6 compare
pH pH 8 +0.8 +2.7 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.8 +2.3 compare
phage P. putida South MOI 0.1 +0.8 +4.2 compare
pH pH 6 +0.9 +2.8 compare
nitrogen source D-2-Aminobutyric (N) +0.9 +2.7 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.9 +2.7 compare
carbon source carbon source Glycerol 108.6 mM +1.0 +3.3 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +1.0 +3.5 compare