Fitness data for PP_1522 in Pseudomonas putida KT2440

major cold shock protein
SEED: Cold shock protein CspA
KEGG: cold shock protein (beta-ribbon, CspA family)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
no stress control Growth with no stress -1.2 -3.6 compare
phage P. putida Sci small MOI 0.1 -1.2 -1.8 compare
nitrogen source 2,6-diaminopimelic (N) -1.1 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.9 -1.8 compare
nitrogen source Caprolactam (N) -0.9 -3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -2.3 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.8 -2.2 compare
carbon source 3-Hydroxyhexanoic (C) -0.8 -3.0 compare
pH D-Glucose (C) pH 6 -0.7 -2.3 compare
pH pH 9 -0.7 -1.2 compare
phage PUT 8 MOI 1 +0.7 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +1.9 compare
carbon source ferulate (C); with MOPS +0.9 +2.1 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.9 +4.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +3.0 compare
carbon source ferulate (C); with MOPS +0.9 +2.2 compare
phage PUT8 MOI 0.1 +1.0 +2.6 compare
phage PUT8 MOI 0.1 +1.0 +2.7 compare
carbon source L-Alanine (C) +1.3 +6.8 compare