Fitness data for PP_1494 in Pseudomonas putida KT2440

Response regulator/GGDEF domain protein
SEED: diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
KEGG: two-component system, chemotaxis family, response regulator WspR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
stress Geraniol 1 vol% -2.1 -7.8 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.0 -3.8 compare
micoeukaryotes C.elegans, mixed culture-1 -0.9 -3.1 compare
micoeukaryotes C.elegans, mixed culture-2 -0.9 -4.2 compare
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.9 -3.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -3.6 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.8 -3.8 compare
lb outgrowth control LB outgrowth control -0.8 -4.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.7 -3.3 compare
carbon source ferulate (C); with MOPS -0.7 -2.1 compare
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -0.7 -2.9 compare
carbon source L-Lysine (C) -0.7 -2.2 compare
temperature shift Temperature shift 30_to_25 +0.7 +3.4 compare
phage P. putida South MOI 10 +0.7 +3.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.7 +2.3 compare
phage P. putida PUT10 MOI 1 +0.7 +3.5 compare
phage P. putida PUT10 MOI 10 +0.8 +5.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +1.0 +4.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.3 compare