Fitness data for PP_1442 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
KEGG: inhibitor of cysteine peptidase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -2.0 -3.3 compare
phage P. putida PUT 7 MOI 1 -1.7 -3.2 compare
phage P. putida Sci small MOI 0.1 -1.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.4 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.2 -1.3 compare
phage P. putida Sci Big MOI 0.1 -1.2 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.2 -2.8 compare
carbon source acetate (C) -1.1 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.1 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.0 -3.9 compare
nitrogen source Urea (N) -1.0 -1.3 compare
nitrogen source 2,6-diaminopimelic (N) -1.0 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -1.8 compare
pH Growth at pH6 and (C) D-Glucose -0.9 -1.1 compare
nitrogen source Ammonium chloride (N) -0.9 -1.3 compare
stress Growth with Chloride 200 mM +1.0 +1.7 compare
carbon source Myristic (C) +1.0 +2.3 compare
pH Growth at pH7 and (C) Trisodium citrate +1.1 +2.1 compare