Fitness data for PP_1438 in Pseudomonas putida KT2440

response regulator
SEED: DNA-binding heavy metal response regulator
KEGG: two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -1.4 -2.0 compare
nitrogen source 2,6-diaminopimelic (N) -0.9 -2.1 compare
nitrogen source NAG (N); with MOPS -0.8 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.4 compare
nitrogen source Propiolactam (N) -0.7 -3.0 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.7 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.7 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -1.3 compare
nitrogen source Ammonium chloride and TNT (N) -0.6 -2.4 compare
carbon source Nonanoic (C) -0.6 -1.5 compare
carbon source L-Leucine (C) -0.6 -1.4 compare
carbon source D-Glucose (C) +0.6 +1.6 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6 +2.4 compare
carbon source carbon source Bisabolene 48.9 mM +0.6 +1.9 compare
pH Growth at pH8 and (C) Trisodium citrate +0.7 +2.2 compare
nitrogen source nitrate (N) +0.7 +2.1 compare
carbon source carbon source D-Glucose 55.5 mM +0.8 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +2.1 compare