Fitness data for PP_1413 in Pseudomonas putida KT2440

Uracil-DNA glycosylase
SEED: Uracil-DNA glycosylase, family 1
KEGG: uracil-DNA glycosylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
temperature shift Temperature shift 30_to_21; with MOPS -0.8 -1.9 compare
phage P. putida Sci small MOI 0.1 -0.7 -2.0 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.6 -2.6 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.6 -3.4 compare
phage P. putida Missley MOI 0.1 -0.6 -1.7 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.6 -2.4 compare
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -0.6 -2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6 +2.5 compare
pH pH 6 +0.6 +1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6 +3.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +2.6 compare
carbon source L-Lysine (C) +0.7 +2.8 compare
carbon source Delta-Nonalactone (C) +0.7 +3.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.7 +3.3 compare
carbon source Nonanoic (C) +0.7 +3.2 compare
stress Isobutyl alcohol 0.6 vol% +0.8 +4.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.9 +3.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.9 compare