Fitness data for PP_1409 in Pseudomonas putida KT2440

ribosomal small subunit pseudouridine synthase A
SEED: Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal small subunit pseudouridine synthase A

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source D-2-Aminobutyric (N) -0.9 -2.7 compare
micoeukaryotes C.elegans, mixed culture-1 -0.7 -3.3 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.7 -3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -2.2 compare
carbon source Lauric (C) -0.5 -2.2 compare
nitrogen source nitrite (N) +0.5 +2.5 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.5 +2.2 compare
carbon source Crotonic (C) +0.5 +2.3 compare
carbon source ferulate (C); with MOPS +0.5 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5 +2.4 compare
pH Valerolactone (C) pH 6.5 +0.5 +2.0 compare
nitrogen source Urea (N) +0.5 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.6 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.9 compare
carbon source 4-Aminobutyric 10 mM (C) +0.7 +3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.7 +3.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.0 compare