Fitness data for PP_1283 in Pseudomonas putida KT2440

poly(beta-D-mannuronate) C5 epimerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. put PUT 10 MOI 10 -0.4 -2.4 compare
phage P. put South MOI 1 -0.4 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -2.0 compare
phage P. putida South MOI 1 -0.4 -2.4 compare
phage P. put PUT 10 MOI 10 -0.4 -2.1 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.1 compare
pH Valerolactone (C) pH 6.5 -0.4 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -1.1 compare
phage P. putida PUT10 MOI 0.1 -0.3 -2.1 compare
phage P. put South MOI 10 -0.3 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.6 compare
phage P. putida Sci small MOI 0.1 +0.3 +1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.4 +1.7 compare
stress Growth with Chloride 500 mM; with MOPS +0.4 +2.4 compare
pH Valerolactone (C) pH 6.5 +0.4 +2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +1.8 compare
pH pH 6 +0.4 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.9 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +2.0 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.5 +2.5 compare