Fitness data for PP_1239 in Pseudomonas putida KT2440

Metallo-beta-lactamase family protein
SEED: Metal-dependent hydrolases of the beta-lactamase superfamily I

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -1.7 -1.6 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.4 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.3 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 -2.6 compare
pH Growth at pH6 and (C) D-Glucose -1.0 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -3.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.9 -3.0 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.9 -2.0 compare
carbon source L-Leucine (C) -0.8 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.8 -1.3 compare
stress R2A with Fusaric 480 ug/mL -0.8 -3.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.4 compare
carbon source Tween 20 (C) +0.7 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.8 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8 +1.7 compare
phage P. putida PUT10 MOI 10 +0.8 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.9 compare
carbon source Valeric (C) +1.0 +1.8 compare
carbon source ferulate (C); with MOPS +1.1 +2.9 compare