Fitness data for PP_1178 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.8 -2.2 compare
carbon source Crotonic (C) -2.1 -2.5 compare
carbon source Lignin Monomers (C) -1.8 -3.0 compare
nitrogen source Urea (N); with MOPS -1.7 -1.0 compare
pH Growth at pH7 and (C) D-Glucose -1.6 -0.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.4 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.4 -0.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -1.8 compare
phage P. put South MOI 10 -1.2 -1.4 compare
nitrogen source NAG (N); with MOPS -1.2 -1.3 compare
pH Growth at pH6 and (C) D-Glucose -1.2 -0.6 compare
pH Growth at pH6 and (C) Trisodium citrate -1.2 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 -1.7 compare
pH Growth at pH6 and (C) D-Glucose -1.1 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -0.9 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -1.0 -2.5 compare
nitrogen source 2,6-diaminopimelic (N) +1.1 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.1 +1.9 compare
nitrogen source 2,6-diaminopimelic (N) +1.2 +1.1 compare