Fitness data for PP_1169 in Pseudomonas putida KT2440

D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data)
Original annotation: TRAP dicarboxylate transporter, DctP subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source D-Galacturonic Acid (C) -6.3 -6.2 compare
carbon source D-Glucuronic gamma lactone (C) -6.0 -7.1 compare
carbon source D-Galacturonic Acid (C) -5.6 -7.7 compare
carbon source D-Glucuronic gamma lactone (C) -5.4 -9.0 compare
carbon source D-Glucuronic Acid (C) -2.6 -11.5 compare
carbon source Rhamnogalacturonan - from potato (C) -1.9 -5.3 compare
carbon source Rhamnogalacturonan - from potato (C) -1.8 -6.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -1.8 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.6 -2.9 compare
phage PUT 8 MOI 1 -0.5 -1.4 compare
phage P. put PUT 10 MOI 10 +0.5 +2.9 compare
phage P. putida PUT 7 MOI 1 +0.5 +2.0 compare
carbon source acetate (C) +0.5 +2.3 compare
phage P. put South MOI 10 +0.6 +2.2 compare
phage P. putida Sci small MOI 0.1 +0.6 +1.8 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol +0.6 +3.8 compare
carbon source D-Glucose (C) +0.6 +2.3 compare
nitrogen source Urea (N) +0.7 +3.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +2.2 compare