Fitness data for PP_1145 in Pseudomonas putida KT2440

RNA polymerase-associated protein RapA
SEED: RNA polymerase associated protein RapA (EC 3.6.1.-)
KEGG: ATP-dependent helicase HepA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -1.1 -6.9 compare
carbon source Valerolactam 10 mM (C) -1.1 -4.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.0 -3.6 compare
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -0.9 -5.6 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.9 -4.1 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -0.9 -4.2 compare
temperature shift Temperature shift 30_to_4 -0.9 -4.1 compare
carbon source 5-Aminovaleric 10 mM (C) -0.9 -3.6 compare
carbon source 5-Aminovaleric 10 mM (C) -0.8 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8 -3.7 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -0.8 -4.2 compare
phage P. put PUT 10 MOI 10 -0.8 -3.1 compare
phage P. putida South MOI 10 -0.8 -2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 -3.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 -5.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 -3.2 compare
temperature shift Temperature shift 30_to_4; with MOPS -0.7 -3.5 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.7 +3.9 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.8 +3.2 compare
nitrogen source Propandiamine (N) +1.0 +3.4 compare