Fitness data for PP_1105 in Pseudomonas putida KT2440

putative DNA ligase, ATP-dependent
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) LigC
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.6 compare
phage P. put South MOI 10 -0.4 -1.6 compare
carbon source 3-Hydroxydecanoic (C) -0.4 -1.8 compare
temperature Growth at 30C; with MOPS -0.4 -1.6 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -1.5 compare
nitrogen source 2,6-diaminopimelic (N) -0.4 -1.5 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.3 -2.1 compare
nitrogen source nitrogen source nitrite 1mM -0.3 -1.5 compare
phage PUT8 MOI 0.1 -0.3 -1.5 compare
carbon source Heptanoic (C) -0.3 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.4 compare
phage moi 100 Time6-phageFRS +0.3 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +2.0 compare
carbon source Lignin Monomers (C) +0.4 +2.3 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.4 +2.0 compare
carbon source carbon source Glycerol 108.6 mM +0.4 +2.0 compare
temperature shift Temperature shift 30_to_25 +0.4 +1.8 compare
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL +0.4 +2.2 compare