Fitness data for PP_1099 in Pseudomonas putida KT2440

Cold shock protein CapB
SEED: Cold shock protein CspA
KEGG: cold shock protein (beta-ribbon, CspA family)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.4)


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group condition fitness t score  
pH Growth at pH8 and (C) D-Glucose -4.3 -3.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.2 -2.3 compare
carbon source Trisodium citrate (C) -3.8 -2.5 compare
temperature shift Temperature shift 30_to_4 -3.5 -4.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -3.5 -3.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -3.4 -3.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.3 -2.2 compare
temperature shift Temperature shift 30_to_4; with MOPS -3.3 -3.9 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -3.2 -3.1 compare
nitrogen source Urea (N) -3.0 -3.2 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.8 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.6 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.5 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.5 -2.4 compare
phage moi 100 Time6-phageFRS -2.5 -2.9 compare
carbon source D-Glucose (C) -2.4 -1.5 compare
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -2.4 -2.7 compare
temperature shift Temperature shift 30_to_4 -2.4 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.4 -1.6 compare
phage P. putida PUT10 MOI 10 +2.6 +11.9 compare