Fitness data for PP_1077 in Pseudomonas putida KT2440

Cys-tRNAPro deacylase
SEED: Cys-tRNA(Pro) deacylase YbaK
KEGG: putative transcription regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage PUT8 MOI 0.1 -0.9 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 -3.1 compare
phage P. putida South MOI 10 -0.7 -2.1 compare
phage P. put PUT 10 MOI 0.1 -0.6 -2.8 compare
stress R2A with Fusaric 480 ug/mL -0.6 -2.9 compare
stress Growth with Chloride 500 mM; with MOPS -0.6 -2.8 compare
stress Growth with Chloride 200 mM -0.6 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.5 compare
nitrogen source Urea (N) -0.5 -1.4 compare
nitrogen source Propiolactam (N) -0.5 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.3 compare
nitrogen source Propandiamine (N) +0.5 +2.1 compare
carbon source Lignin Monomers (C) +0.5 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.2 compare
nitrogen source NAG (N); with MOPS +0.6 +1.7 compare
nitrogen source D-2-Aminobutyric (N) +0.7 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.4 compare