Fitness data for PP_1046 in Pseudomonas putida KT2440

Type II secretion pathway protein XcpQ
SEED: General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD)
KEGG: general secretion pathway protein D

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -3.1 compare
temperature Growth at 30C; with MOPS -0.5 -2.0 compare
nitrogen source D-2-Aminobutyric (N) -0.5 -1.9 compare
carbon source Tween 20 (C) -0.5 -1.9 compare
pH Valerolactone (C) pH 6.5 -0.5 -1.9 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -1.5 compare
pH Valerolactone (C) pH 6.5 -0.4 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.6 compare
nitrogen source 2,6-diaminopimelic (N) -0.4 -1.7 compare
temperature shift Temperature shift 10_to_21; with MOPS -0.4 -1.8 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.4 -2.1 compare
pH Growth at pH6 and (C) Trisodium citrate -0.4 -1.7 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.4 +2.5 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) +0.4 +2.0 compare
pH Growth at pH8 and (C) D-Glucose +0.4 +1.6 compare
nitrogen source Urea (N); with MOPS +0.4 +2.2 compare
carbon source Decanoic (C) +0.4 +2.7 compare
pH pH 9 +0.4 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.7 compare
carbon source L-Leucine (C) +0.4 +2.3 compare