Fitness data for PP_1038 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Bsu YqfO NIF3/CutA domain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
nitrogen source D-2-Aminobutyric (N) -3.3 -0.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -2.7 -1.6 compare
temperature Growth at 30C; with MOPS -2.5 -1.5 compare
pH Growth at pH7 and (C) D-Glucose -2.2 -1.1 compare
carbon source ferulate (C); with MOPS -2.1 -1.4 compare
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -2.0 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.8 -1.7 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -1.7 -2.3 compare
pH D-Glucose (C) pH 6 -1.6 -0.9 compare
temperature shift Temperature shift 10_to_30; with MOPS -1.5 -1.4 compare
nitrogen source nitrogen source nitrate 5mM -1.4 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -1.1 compare
nitrogen source D-2-Aminobutyric (N) -1.3 -0.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +1.3 +0.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +1.4 +2.8 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +1.4 +2.9 compare
pH Growth at pH6 and (C) Trisodium citrate +1.5 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.5 +1.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +1.9 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.1 +1.9 compare