Fitness data for PP_1008 in Pseudomonas putida KT2440

RNA polymerase subunit sigma-24

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -4.6 -2.5 compare
carbon source Myristic (C) -2.7 -1.6 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -2.3 -2.1 compare
pH Growth at pH6 and (C) Trisodium citrate -1.9 -2.4 compare
nitrogen source nitrogen source nitrite 1mM -1.8 -1.8 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5 -1.0 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -1.4 -1.7 compare
pH Growth at pH6 and (C) Trisodium citrate -1.4 -1.5 compare
nitrogen source Urea (N) -1.4 -0.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.4 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.3 -1.3 compare
carbon source Trisodium citrate 10 mM (C) -1.2 -2.2 compare
phage P. putida Sci small MOI 0.1 -1.2 -0.8 compare
pH pH 4 +1.4 +1.5 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +1.5 +3.3 compare
carbon source D-Glucose (C) +1.8 +3.7 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.8 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.2 +2.6 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +2.2 +7.2 compare