Fitness data for PP_0876 in Pseudomonas putida KT2440

Transcriptional regulator, AraC family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -1.0 -2.0 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.7 -2.5 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.7 -2.6 compare
carbon source D-Glucose (C) -0.7 -2.3 compare
nitrogen source D-2-Aminobutyric (N) -0.7 -2.5 compare
nitrogen source NAG (N); with MOPS -0.7 -1.9 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.6 -2.6 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.6 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -2.0 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.6 -2.5 compare
carbon source 5-Aminovaleric 10 mM (C) -0.6 -2.6 compare
pH Growth at pH9 and (C) Trisodium citrate -0.6 -2.3 compare
nitrogen source Urea (N) -0.6 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -2.0 compare
temperature Growth at 25C -0.5 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -3.2 compare
temperature shift Temperature shift 10_to_34; with MOPS -0.5 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +2.5 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.4 compare